- Bloody Jack: Being an Account of the Curious Adventures of Mary Jacky Faber, Ship's Boy (2002)
- The Curse of the Blue Tattoo: Being an Account of the Misadventures of Jacky Faber, Midshipman and Fine Lady (2004)
- Under the Jolly Roger: Being an Account of the Further Nautical Adventures of Jacky Faber (2005)
- In the Belly of the Bloodhound: Being an Account of a Particularly Peculiar Adventure in the Life of Jacky Faber (2006)
- Mississippi Jack: Being an Account of the Further Waterborne Adventures of Jacky Faber, Midshipman, Fine Lady, and the Lily of the West (2007)
- My Bonny Light Horseman: Being an Account of the Further Adventures of Jacky Faber, in Love and War (2008)
- Rapture of the Deep: Being an Account of the Further Adventures of Jacky Faber, Soldier, Sailor, Mermaid, Spy (2009)
- The Wake of the Lorelei Lee: Being an Account of the Adventures of Jacky Faber, on her Way to Botany Bay (September 2010)
- The Mark of the Golden Dragon: Being and Account of the Further Adventures of Jacky Faber, Jewel of the East, Vexation of the West, and Pearl of the South China Sea(September 2011)
Bloody Jack: When Rooster Charlie is killed by Muck, a corpse seller to the local anatomists and a vile creature, Mary takes his clothes and poses as a boy, in order to get a job. Dressed in boy's clothing, she go to the docks and ends up being hired as one of six ship's boys on the British warship H.M.S. Dolphin. Cunning and charming, Mary is hired on because she can read, and she signs aboard under the alias Jack (Jacky) Faber. Soon she meets her fellow ship's boys, Willy, Tink, Benjy, Davy, and Jaimy.
After some time on the ship, Jacky catches the Captain's eye when she makes a new uniform for herself, and is asked to sew up more for the others. Around this time, Jacky begins her puberty, and having no education in that way thinks that she is dying. After, a pirate ship is spotted and a battle begins. The crew boards the enemy ship, and Jacky picks up a pistol from a dead pirate. She sees a pirate making a path for the side of the ship and about to kill the one of the ships boys Jaimy that Jacky is was starting to have feelings for. Then she shoots the pirate, who is carrying a chest of money, and thus gets the nickname "Bloody Jack". It is in this battle that Benjy, a ship's boy in The Brotherhood, (what Jacky and the other ship's boys call themselves), is killed. The ship heads for Palma to get there ship repaired after the battle. At about this time, Jacky first menstruates, and her upbringing having left her unaware of the details of female physical maturation, she believes that she is ill and about to die.
After the ship lands at Palma, the ship's boys go to get a tattoo to show their brotherhood. Jacky then goes to a brothel to find a woman to ask 'for a friend' why she had bled before, where the madam quickly sees through her disguise and informs Jacky of the details of female bodies. The rest of the ship's boys consider Jack a rake after this, as they only know one nominal reason for a visit to a brothel.
Then the ship heads for the Caribbean Sea. While Jacky is in the schoolroom, Midshipman Bliffil starts to beat Jacky up, and only stops when the teacher yells at him. Jacky is put in the sick ward for her injuries. She convinces Midshipman Jenkins to stand up to Bliffil and teaches him some fighting moves. A crew member Bill Sloat threatens Jacky and her sea dad Liam Delaney he tries to protect her, which causes some problems. When Bliffil attacks Jacky again, Jenkins stands up to him. Jacky begins to sleep in the rope locker because The Brotherhood had an argument, and this is when Sloat tries to rape her. Jacky tries to protect herself by stabbing him with her knife, but she injures him more than she had meant to, and ends up stabbing him in the stomach and he stumbles overboard. Liam is put on trial for the murder and he is going to be hanged. Jacky intervenes and confesses to stabbing Sloat. She is put in confinement and thinks that she will be hanged to, but she is set free because she acted in self-defense.
After that she is welcomed back by into the Brotherhood but the feeling is still weird. Jaimy admits to her that he has strange feelings for her, and that is when Jacky asks him to hold up a dress so she can mark it, and Jaimy learns that she is really a girl and that she has feelings for him.
Soon after they arrive in Kingston, Jamaica. Jacky and Jaimy go out on the streets, and Jacky wears a dress that she bought. They eat at a café, and Davy and Tink see them. Davy and Tink do not know that the girl Jaimy is eating with Jacky, and she leaves and changes back into her ship boy clothing. Then they set sail again and hunt for the pirates.
They soon meet LeFievre, a pirate, at sea. There is a battle, but LeFievre gets away, and the Dolphin is damaged and sinking but men are at the pumps pumping out water when land is sighted, and they stop there. Davy learns of Jacky's true identity when he discovers her and Jaimy curled up in a hammock together. Soon after, Mr. Tilden the teacher wants to put Jacky on a kite and fly her up so she can see more land, but the winds were blowing so hard that the tree she is tied to is ripped out of the ground and after many hours of flying she lands on an unknown island. She stays there for a few days and uses smoke signals to try to get the attention of HMS Dolphin. A boat crew from the Dolphin comes to rescue her and she finds out that LeFievre and his pirates are on the island with her and waiting to ambush the rescue crew. She tries to lead the rescue crew away but the pirates catch her and hold her for hanging and money. She is hanged, but is so scrawny and skinny that she just hangs there choking. The HMS Dolphin rescue crew lands, and Jaimy quickly cuts the rope she is hanging on, and Jacky survives.
Then she is finally discovered to be a girl. She is guarded by someone everywhere she goes. She is confined from almost everyone on board, including her old mates, but they secretly sneak over to the grating above her room to talk to her. She is told by the captain that she will be enrolled in Lawson Peabody's School for Girls in Boston, and then the book concludes with her stepping off the ship.